PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_14451A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family LBD
Protein Properties Length: 169aa    MW: 18403.8 Da    PI: 6.2143
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_14451AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.83.7e-3881081100
                     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 
                                +C aCk+lrrkC+k+Cv+apyf++eq +++fa++h++FGasn +kll +lp ++r +a+ ++ yeA+ar++dP+yG+v++i++l
  Oropetium_20150105_14451A   8 PCGACKFLRRKCVKGCVFAPYFCHEQgAAHFAAIHRVFGASNASKLLMHLPISDRCEAAVTMSYEAQARLQDPIYGCVAHIFSL 91 
                                7*************************89******************************************************** PP

                     DUF260  84 qqqleqlkaelallkee 100
                                qqq+ +l+a+l++lk+e
  Oropetium_20150105_14451A  92 QQQVVRLQAQLDSLKAE 108
                                ***********999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.6587109IPR004883Lateral organ boundaries, LOB
PfamPF031953.5E-368106IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MMTGFGSPCG ACKFLRRKCV KGCVFAPYFC HEQGAAHFAA IHRVFGASNA SKLLMHLPIS  60
DRCEAAVTMS YEAQARLQDP IYGCVAHIFS LQQQVVRLQA QLDSLKAEAT LGYGDGSLTS  120
NPQKENCYEA DLCMPDYNSS NTSWTEQGSG YHDMDDLQSV ALAYLNQA*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN6726701e-111JN672670.1 Eragrostis tef bio-material GRIN PI524434 clone Tefdw3b, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974249.17e-98PREDICTED: LOB domain-containing protein 29-like
SwissprotQ9M2J76e-66LBD29_ARATH; LOB domain-containing protein 29
TrEMBLK3YLN28e-98K3YLN2_SETIT; Uncharacterized protein
STRINGSi015156m2e-97(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25013893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.14e-58lateral organ boundaries-domain 29